PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101712.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 927aa    MW: 104645 Da    PI: 8.7505
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.2e-08214234526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      Cr+fa+ G C++G+ C+F H+
  XP_011101712.1 214 VCRDFAA-GSCRRGSHCRFLHP 234
                     6******.*************9 PP

2zf-CCCH17.57.4e-06298318425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++C++f+r G C+  d+C+F+H
  XP_011101712.1 298 PPCKDFMR-GKCRWEDTCRFSH 318
                     79******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.192209236IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-6210235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5213234IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5214234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53294321IPR000571Zinc finger, CCCH-type
SMARTSM003560.014294320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4299319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573346372IPR000571Zinc finger, CCCH-type
SMARTSM003560.014346371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    Send to blast
MAERRKRRSL WDMEEETKHL SGVSEHNSWT AKDHHSSHGS GRYYEYSDSR TAITENSRDD  60
SRWPPWEAIE ENPVAPMNGS FKNTPEGKEM GHQRERYYKK MSPGFDRIEL HNYNHTREYD  120
RSHSQRYPGR GRGRSQSRSR TRGRSRSRSL SRDRGRERGR GRGWSRSRSR SRSRSRNDIN  180
AKDHTRSRSP VGDYRRQSYG WNDRRSGPEK SSQVCRDFAA GSCRRGSHCR FLHPDSRSLR  240
DGDFVEDDMA GSWRSRGDYS RIPRHSYSRG SALELQNDVS DPYHGEDDQF PSKSRTAPPC  300
KDFMRGKCRW EDTCRFSHHA ASDDGFRQGT RNPSFDKDID RRQPYKNGKP LCKYFVAGKC  360
DRDNCRFSHE DQNNNLEGRQ SEVTESCNSH DKSNWWNGPK WDDATRISDR PKPTGWVETN  420
VTNTTGTVDT GNGQNDERGG YSLQNENKTW GVVECKSGSL NCEKQPSLPR ECGSYGVDTG  480
ATESVGNDNM HNKRKHLVLH GSQLQNQDGI ADVRGQNALP ESQIFSIKAL EQNVHPASHI  540
QQPHCGAIEN NLSGVIDEVK DTRYTTHPIL FSGQSLNQDG GSMFPGHSSI LTEDHRVQNV  600
LCPNPSNGFS VDLNRPEIHI VDLLNAQTQM QNNQKAVHSQ GLLEAKVPQL LTNLLTSEHP  660
AQVTNSLVSN LGRQVSPVTD PVSLTQRLAN EDSQTYEDME VSGSKAMVPP FSDSTGRAPF  720
VNSINVQHNQ NAAALSLLNS MGNGRDDTEH SNHNLAQVTE ERNQMRLEPS SPLPVVTEFD  780
SSKVKHPGSP RLKQEEVVAN SEVTGGNKTI GEESKGVQEN KHSETLGGHG KVEEGNANKD  840
EKGMRIFKNA LVELVKEILK PTWKEGRMSR EVHKTVVKKV VDKVSSTIQV DHIPKTQDKA  900
EQYLSNSKPK ISKLVQAYVE RCRKADS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165175RSRSRSRSRSR
2167175RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101707.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like
RefseqXP_011101709.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like
RefseqXP_011101712.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-12C3H family protein